FSL-MRS can currently be installed using one of two methods.
Option 1: From GitLab¶
git clone --recurse-submodules https://git.fmrib.ox.ac.uk/fsl/fsl_mrs.git cd fsl_mrs pip install .
Option 2: From Conda¶
The primary installation method is via conda. After installing conda and creating or activating a suitable you can install FSL-MRS from the FSL conda channel. See our page on setting up a conda enviroment for a step by step guide.
conda install -c conda-forge -c defaults \ -c https://fsl.fmrib.ox.ac.uk/fsldownloads/fslconda/public/ \ fsl_mrs
FSL-MRS has been tested thoroughly on Mac and Linux operating systems. FSL-MRS dependencies and FSL-MRS is available on native Windows installations, but has not currently been tested. Windows Subsystem for Linux (or WSL2) offers a Linux interface on Windows. FSL-MRS has been tested on WSL.